PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0370s00210.1
Common NameLR48_Vigan50s010200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 233aa    MW: 26168.1 Da    PI: 4.806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0370s00210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1796145355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+++AeIrd + ng   r+++g+f+tae Aa a+++a+ + +g
  Vang0370s00210.1  96 YRGVRKRP-WGKFAAEIRDSTRNG--VRVWIGTFDTAEAAALAYDQAAFSTRG 145
                       9*******.**********44465..**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.72195153IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2295155IPR016177DNA-binding domain
SMARTSM003808.5E-3595159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-2995154IPR001471AP2/ERF domain
PfamPF008473.6E-1296145IPR001471AP2/ERF domain
CDDcd000181.01E-1896154No hitNo description
PRINTSPR003672.1E-1096107IPR001471AP2/ERF domain
PRINTSPR003672.1E-10119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDLPLDLDFD YHLFPNQNLN FFENAGDPFS WDYNFDDIFN FSYDQTKESS SASNVSGSVG  60
SVELHEVSSD NTTYEDVSKE TEPVAAPVPV KEGRMYRGVR KRPWGKFAAE IRDSTRNGVR  120
VWIGTFDTAE AAALAYDQAA FSTRGSLAVL NFPVEVVRES LKDMPSKPWE EGSSPVLALK  180
RKHTMRKKSS SKKKKSKSDG REQLEFCTTS QNVLVFEDLG AEYLEQLLSL TY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2892156266ATERF1
3gcc_A2e-2892156266ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179194KRKHTMRKKSSSKKKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495459.11e-138PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8VYM01e-55ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A0L9T3N01e-173A0A0L9T3N0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RYB11e-173A0A0S3RYB1_PHAAN; Uncharacterized protein
STRINGGLYMA03G31940.11e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.13e-44ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]